Welcome to CSU-wiki's Documentation!
Thanks for visiting the CSU Theory Suite's wiki page! Feel free to also visit the Paton Lab Website or the Kim Lab Website!
Adding Packages
Getting Started
- Paton Lab Computing Resources
- Kim Lab Computing Resources
- Essential Unix Commands
- File System Layout
- Running Commands
- Helpful Commands and Tips
- Using Wild Cards
- Redirecting Output to a File
- Creating Shortcuts for Common Commands
- Pattern Scanning
- Back to the Beginning of the Command Prompt
- Canceling a Command Before you Execute
- Clearing the Terminal Screen
- Search Previous Commands
- Disk Usage Details
- Display a Line of Text
- How to Logout
- Search for Files
- Print Lines Matching a Pattern
- Printing the Beginning of a File
- Viewing Your Recent Commands
- What Computer am I Working on?
- Terminating Interactive Processes
- Read Files Without Editing
- Different Ways to List Files
- Combining Commands into a Single Line
- What Processes are Running in my Terminal Window
- What Directory am I in?
- Transferring Files
- Filtering and Modifying Text
- Tell the Computer to Wait
- Remotely Accessing Computers or Clusters
- Sorting and Re-Ordering Data
- Auto Fill Unique Names
- Printing the End of a File
- Packaging your Files into a Single Combined File
- Create a New File
- Running Previous Commands
- What Program am I Using?
- Learn About the Computer
- In Case You're Confused...
- Syncing Changes Between Computing Resources Using Github
- Moving Certain Files
- Find and Replace in Files
- Cancel SLURM Jobs
- Fun with Coworkers
- Coding Resources
Helpful Packages
Graphical Software
Example Workflows
- End-to-End Workflow in ACME
- GoodVibes
- REGGAE
- RDKit, Mordred, Morfeus & DBStep
- CENSO
- NCIPLOT
- qcalibrate